IL_4V6D_298

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

4V6D|1|DA|U|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6D_298 not in the Motif Atlas

Homologous match to IL_7A0S_053

Geometric discrepancy: 0.3505

The information below is about IL_7A0S_053

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V6D|1|DA|C|1437
4V6D|1|DA|U|1438
4V6D|1|DA|A|1439
4V6D|1|DA|U|1440
*
4V6D|1|DA|A|1551
4V6D|1|DA|A|1552
4V6D|1|DA|A|1553
4V6D|1|DA|U|1554
4V6D|1|DA|G|1555

Current chains

Chain DA

23S rRNA

Nearby chains