IL_4V6D_364

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6D_364 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0877

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4V6D|1|BA|U|1851
4V6D|1|BA|U|1852
4V6D|1|BA|A|1853
4V6D|1|BA|A|1854
4V6D|1|BA|U|1855
4V6D|1|BA|U|1856
4V6D|1|BA|G|1857
4V6D|1|BA|A|1858
4V6D|1|BA|U|1859
4V6D|1|BA|G|1860
*
4V6D|1|BA|U|1882
4V6D|1|BA|U|1883
4V6D|1|BA|G|1884
4V6D|1|BA|A|1885
4V6D|1|BA|U|1886
4V6D|1|BA|C|1887
4V6D|1|BA|G|1888
4V6D|1|BA|A|1889
4V6D|1|BA|A|1890
4V6D|1|BA|G|1891

Current chains

Chain BA

23S rRNA

Nearby chains