IL_4V6E_038

3D structure

PDB id

4V6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6E_038 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0808

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4V6E|1|AA|G|887
4V6E|1|AA|G|888
4V6E|1|AA|A|889
4V6E|1|AA|G|890
4V6E|1|AA|U|891
4V6E|1|AA|A|892
4V6E|1|AA|C|893
4V6E|1|AA|G|894
*
4V6E|1|AA|U|905
4V6E|1|AA|A|906
4V6E|1|AA|A|907
4V6E|1|AA|A|908
4V6E|1|AA|A|909
4V6E|1|AA|C|910

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

30S ribosomal protein S12