IL_4V6E_144

3D structure

PDB id

4V6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

AA*UACU

Length

6 nucleotides

Bulged bases

4V6E|1|BA|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6E_144 not in the Motif Atlas

Homologous match to IL_4WF9_081

Geometric discrepancy: 0.0687

The information below is about IL_4WF9_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

4V6E|1|BA|A|2070
4V6E|1|BA|A|2071
*
4V6E|1|BA|U|2438
4V6E|1|BA|A|2439
4V6E|1|BA|C|2440
4V6E|1|BA|U|2441

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2