3D structure

PDB id
4V6E (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting
Experimental method
X-RAY DIFFRACTION
Resolution
3.71 Å

Loop

Sequence
UGUAAG*UUGAG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6E_172 not in the Motif Atlas
Homologous match to IL_7RQB_110
Geometric discrepancy: 0.0804
The information below is about IL_7RQB_110
Detailed Annotation
tHS double platform
Broad Annotation
No text annotation
Motif group
IL_83162.5
Basepair signature
cWW-tSH-L-tHH-L-cWW
Number of instances in this motif group
7

Unit IDs

4V6E|1|BA|U|2847
4V6E|1|BA|G|2848
4V6E|1|BA|U|2849
4V6E|1|BA|A|2850
4V6E|1|BA|A|2851
4V6E|1|BA|G|2852
*
4V6E|1|BA|U|2865
4V6E|1|BA|U|2866
4V6E|1|BA|G|2867
4V6E|1|BA|A|2868
4V6E|1|BA|G|2869

Current chains

Chain BA
23S rRNA

Nearby chains

Chain BN
50S ribosomal protein L17
Chain BP
50S ribosomal protein L19

Coloring options:


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