IL_4V6E_248
3D structure
- PDB id
- 4V6E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.71 Å
Loop
- Sequence
- GUAAG*CGUUAUAAC
- Length
- 14 nucleotides
- Bulged bases
- 4V6E|1|DA|U|102
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6E_248 not in the Motif Atlas
- Homologous match to IL_8VTW_004
- Geometric discrepancy: 0.5966
- The information below is about IL_8VTW_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
4V6E|1|DA|G|81
4V6E|1|DA|U|82
4V6E|1|DA|A|83
4V6E|1|DA|A|84
4V6E|1|DA|G|85
*
4V6E|1|DA|C|97
4V6E|1|DA|G|98
4V6E|1|DA|U|99
4V6E|1|DA|U|100
4V6E|1|DA|A|101
4V6E|1|DA|U|102
4V6E|1|DA|A|103
4V6E|1|DA|A|104
4V6E|1|DA|C|105
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain DU
- 50S ribosomal protein L24
- Chain DY
- 50S ribosomal protein L29
Coloring options: