IL_4V6E_265

3D structure

PDB id

4V6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

4V6E|1|DA|A|788, 4V6E|1|DA|A|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6E_265 not in the Motif Atlas

Homologous match to IL_5J7L_265

Geometric discrepancy: 0.1734

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

4V6E|1|DA|G|775
4V6E|1|DA|G|776
4V6E|1|DA|G|777
*
4V6E|1|DA|C|787
4V6E|1|DA|A|788
4V6E|1|DA|A|789
4V6E|1|DA|U|790
4V6E|1|DA|C|791

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L34

Chain DC

50S ribosomal protein L2

Chain DS

50S ribosomal protein L22