IL_4V6E_293

3D structure

PDB id

4V6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

4V6E|1|DA|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6E_293 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.2657

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

4V6E|1|DA|G|1432
4V6E|1|DA|A|1433
4V6E|1|DA|A|1434
4V6E|1|DA|G|1435
*
4V6E|1|DA|C|1557
4V6E|1|DA|C|1558
4V6E|1|DA|U|1559
4V6E|1|DA|G|1560
4V6E|1|DA|C|1561

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DC

50S ribosomal protein L2