IL_4V6E_358

3D structure

PDB id

4V6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

ACGG*CGAGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6E_358 not in the Motif Atlas

Geometric match to IL_1U6B_004

Geometric discrepancy: 0.3883

The information below is about IL_1U6B_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

4V6E|1|CA|A|66
4V6E|1|CA|C|67
4V6E|1|CA|G|68
4V6E|1|CA|G|69
*
4V6E|1|CA|C|99
4V6E|1|CA|G|100
4V6E|1|CA|A|101
4V6E|1|CA|G|102
4V6E|1|CA|U|103

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CT

30S ribosomal protein S20