IL_4V6E_362
3D structure
- PDB id
- 4V6E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.71 Å
Loop
- Sequence
- CCUAAG*CGAUGG
- Length
- 12 nucleotides
- Bulged bases
- 4V6E|1|DA|U|1379
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6E_362 not in the Motif Atlas
- Geometric match to IL_4WF9_104
- Geometric discrepancy: 0.2503
- The information below is about IL_4WF9_104
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_49767.8
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V6E|1|DA|C|1350
4V6E|1|DA|C|1351
4V6E|1|DA|U|1352
4V6E|1|DA|A|1353
4V6E|1|DA|A|1354
4V6E|1|DA|G|1355
*
4V6E|1|DA|C|1376
4V6E|1|DA|G|1377
4V6E|1|DA|A|1378
4V6E|1|DA|U|1379
4V6E|1|DA|G|1380
4V6E|1|DA|G|1381
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain D2
- 50S ribosomal protein L34
- Chain DC
- 50S ribosomal protein L2
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