IL_4V6E_362

3D structure

PDB id

4V6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

CCUAAG*CGAUGG

Length

12 nucleotides

Bulged bases

4V6E|1|DA|U|1379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6E_362 not in the Motif Atlas

Geometric match to IL_4WF9_104

Geometric discrepancy: 0.2503

The information below is about IL_4WF9_104

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4V6E|1|DA|C|1350
4V6E|1|DA|C|1351
4V6E|1|DA|U|1352
4V6E|1|DA|A|1353
4V6E|1|DA|A|1354
4V6E|1|DA|G|1355
*
4V6E|1|DA|C|1376
4V6E|1|DA|G|1377
4V6E|1|DA|A|1378
4V6E|1|DA|U|1379
4V6E|1|DA|G|1380
4V6E|1|DA|G|1381

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L34

Chain DC

50S ribosomal protein L2