IL_4V6F_054

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AAG*CGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6F_054 not in the Motif Atlas

Geometric match to IL_5J7L_340

Geometric discrepancy: 0.3008

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4V6F|1|AA|A|1359
4V6F|1|AA|A|1360
4V6F|1|AA|G|1361
*
4V6F|1|AA|C|1370
4V6F|1|AA|G|1371
4V6F|1|AA|U|1372

Current chains

Chain AA

23S RIBOSOMAL RNA

Nearby chains

Chain AD

50S RIBOSOMAL PROTEIN L2

Chain AZ

50S RIBOSOMAL PROTEIN L28