IL_4V6F_117

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUUU*AUCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6F_117 not in the Motif Atlas

Geometric match to IL_7A0S_040

Geometric discrepancy: 0.2037

The information below is about IL_7A0S_040

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

4V6F|1|B1|U|38
4V6F|1|B1|U|39
4V6F|1|B1|U|40
4V6F|1|B1|U|41
*
4V6F|1|BA|A|1531
4V6F|1|BA|U|1532
4V6F|1|BA|C|1533
4V6F|1|BA|A|1534

Current chains

Chain B1

MRNA

Chain BA

16S ribosomal RNA

Nearby chains

Chain BJ

30S ribosomal protein S7

Chain BN

30S ribosomal protein S11