IL_4V6F_124

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGAC*GGC

Length

8 nucleotides

Bulged bases

4V6F|1|BA|G|129|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6F_124 not in the Motif Atlas

Homologous match to IL_5J7L_009

Geometric discrepancy: 0.3944

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

4V6F|1|BA|G|128
4V6F|1|BA|U|129
4V6F|1|BA|G|129|||A
4V6F|1|BA|A|130
4V6F|1|BA|C|131
*
4V6F|1|BA|G|231
4V6F|1|BA|G|232
4V6F|1|BA|C|233

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BS

30S ribosomal protein S16

Chain BT

30S ribosomal protein S17

Chain BW

30S ribosomal protein S20