IL_4V6F_136

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6F_136 not in the Motif Atlas

Geometric match to IL_4LFB_019

Geometric discrepancy: 0.1273

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4V6F|1|BA|G|450
4V6F|1|BA|A|451
4V6F|1|BA|A|452
4V6F|1|BA|A|453
4V6F|1|BA|C|454
4V6F|1|BA|C|455
*
4V6F|1|BA|G|477
4V6F|1|BA|A|478
4V6F|1|BA|C|479
4V6F|1|BA|U|480
4V6F|1|BA|G|481
4V6F|1|BA|A|482
4V6F|1|BA|C|483

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BS

30S ribosomal protein S16