3D structure

PDB id
4V6F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongation complex of the 70S ribosome with three tRNAs and mRNA.
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UGAAAGAC*GGGGAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6F_205 not in the Motif Atlas
Homologous match to IL_4LFB_026
Geometric discrepancy: 0.2887
The information below is about IL_4LFB_026
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_78349.3
Basepair signature
cWW-L-R-L-R-L-R-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

4V6F|1|CA|U|605
4V6F|1|CA|G|606
4V6F|1|CA|A|607
4V6F|1|CA|A|608
4V6F|1|CA|A|609
4V6F|1|CA|G|610
4V6F|1|CA|A|611
4V6F|1|CA|C|612
*
4V6F|1|CA|G|628
4V6F|1|CA|G|629
4V6F|1|CA|G|630
4V6F|1|CA|G|631
4V6F|1|CA|A|632
4V6F|1|CA|G|633

Current chains

Chain CA
16S ribosomal RNA

Nearby chains

Chain CG
30S ribosomal protein S4
Chain CK
30S ribosomal protein S8
Chain CS
30S ribosomal protein S16

Coloring options:


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