IL_4V6F_213

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6F_213 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.0713

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4V6F|1|CA|G|887
4V6F|1|CA|G|888
4V6F|1|CA|A|889
4V6F|1|CA|G|890
4V6F|1|CA|U|891
4V6F|1|CA|A|892
4V6F|1|CA|C|893
4V6F|1|CA|G|894
*
4V6F|1|CA|U|905
4V6F|1|CA|G|906
4V6F|1|CA|A|907
4V6F|1|CA|A|908
4V6F|1|CA|A|909
4V6F|1|CA|C|910

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CO

30S ribosomal protein S12

Chain CT

30S ribosomal protein S17