IL_4V6F_292

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

4V6F|1|DA|A|1379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6F_292 not in the Motif Atlas

Homologous match to IL_7RQB_052

Geometric discrepancy: 0.0615

The information below is about IL_7RQB_052

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

4V6F|1|DA|C|1351
4V6F|1|DA|U|1352
4V6F|1|DA|A|1353
4V6F|1|DA|A|1354
4V6F|1|DA|G|1355
*
4V6F|1|DA|C|1376
4V6F|1|DA|G|1377
4V6F|1|DA|A|1378
4V6F|1|DA|A|1379
4V6F|1|DA|G|1380

Current chains

Chain DA

23S RRNA

Nearby chains

Chain D7

50S RIBOSOMAL PROTEIN L34

Chain DD

50S RIBOSOMAL PROTEIN L2