3D structure

PDB id
4V6F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongation complex of the 70S ribosome with three tRNAs and mRNA.
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CGAUG*CUAAG
Length
10 nucleotides
Bulged bases
4V6F|1|DA|U|1420
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6F_296 not in the Motif Atlas
Homologous match to IL_7RQB_055
Geometric discrepancy: 0.1432
The information below is about IL_7RQB_055
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_89002.2
Basepair signature
cWW-tWH-L-tHS-cWW
Number of instances in this motif group
20

Unit IDs

4V6F|1|DA|C|1417
4V6F|1|DA|G|1418
4V6F|1|DA|A|1419
4V6F|1|DA|U|1420
4V6F|1|DA|G|1421
*
4V6F|1|DA|C|1577
4V6F|1|DA|U|1578
4V6F|1|DA|A|1579
4V6F|1|DA|A|1580
4V6F|1|DA|G|1581

Current chains

Chain DA
23S RRNA

Nearby chains

No other chains within 10Å

Coloring options:


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