IL_4V6F_368

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

4V6F|1|DA|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6F_368 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.1395

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V6F|1|DA|C|844
4V6F|1|DA|G|845
4V6F|1|DA|C|846
4V6F|1|DA|U|847
4V6F|1|DA|G|848
4V6F|1|DA|A|849
4V6F|1|DA|C|850
*
4V6F|1|DA|G|928
4V6F|1|DA|G|929
4V6F|1|DA|U|930
4V6F|1|DA|G|931
4V6F|1|DA|G|932
4V6F|1|DA|A|933
4V6F|1|DA|G|934

Current chains

Chain DA

23S RRNA

Nearby chains

Chain DX

50S RIBOSOMAL PROTEIN L30