IL_4V6F_369

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6F_369 not in the Motif Atlas

Homologous match to IL_7A0S_049

Geometric discrepancy: 0.3094

The information below is about IL_7A0S_049

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

4V6F|1|DA|U|1357
4V6F|1|DA|G|1358
4V6F|1|DA|A|1359
4V6F|1|DA|A|1360
4V6F|1|DA|G|1361
*
4V6F|1|DA|C|1370
4V6F|1|DA|G|1371
4V6F|1|DA|U|1372
4V6F|1|DA|A|1373
4V6F|1|DA|G|1374

Current chains

Chain DA

23S RRNA

Nearby chains

Chain D7

50S RIBOSOMAL PROTEIN L34

Chain DD

50S RIBOSOMAL PROTEIN L2

Chain DZ

50S RIBOSOMAL PROTEIN L28