IL_4V6G_013

3D structure

PDB id

4V6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of 70S ribosome with two tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GG*UGGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6G_013 not in the Motif Atlas

Homologous match to IL_4LFB_013

Geometric discrepancy: 0.1288

The information below is about IL_4LFB_013

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

4V6G|1|AA|G|292
4V6G|1|AA|G|293
*
4V6G|1|AA|U|304
4V6G|1|AA|G|305
4V6G|1|AA|G|306
4V6G|1|AA|C|307
4V6G|1|AA|C|308

Current chains

Chain AA

16S RRNA (E.COLI NUMBERING)

Nearby chains

Chain AO

30S RIBOSOMAL PROTEIN S12

Chain AS

30S RIBOSOMAL PROTEIN S16