IL_4V6G_015

3D structure

PDB id

4V6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of 70S ribosome with two tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCAAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6G_015 not in the Motif Atlas

Geometric match to IL_5J7L_018

Geometric discrepancy: 0.106

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

4V6G|1|AA|G|371
4V6G|1|AA|C|372
4V6G|1|AA|A|373
4V6G|1|AA|A|374
4V6G|1|AA|U|375
*
4V6G|1|AA|A|389
4V6G|1|AA|C|390

Current chains

Chain AA

16S RRNA (E.COLI NUMBERING)

Nearby chains

Chain AS

30S RIBOSOMAL PROTEIN S16