IL_4V6G_019

3D structure

PDB id

4V6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of 70S ribosome with two tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6G_019 not in the Motif Atlas

Homologous match to IL_4LFB_019

Geometric discrepancy: 0.1341

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4V6G|1|AA|G|450
4V6G|1|AA|A|451
4V6G|1|AA|A|452
4V6G|1|AA|A|453
4V6G|1|AA|C|454
4V6G|1|AA|C|455
*
4V6G|1|AA|G|477
4V6G|1|AA|A|478
4V6G|1|AA|C|479
4V6G|1|AA|U|480
4V6G|1|AA|G|481
4V6G|1|AA|A|482
4V6G|1|AA|C|483

Current chains

Chain AA

16S RRNA (E.COLI NUMBERING)

Nearby chains

Chain AS

30S RIBOSOMAL PROTEIN S16