IL_4V6G_031

3D structure

PDB id

4V6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of 70S ribosome with two tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

4V6G|1|AA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6G_031 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.1119

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

4V6G|1|AA|G|683
4V6G|1|AA|A|684
4V6G|1|AA|G|685
4V6G|1|AA|U|686
4V6G|1|AA|A|687
4V6G|1|AA|G|688
*
4V6G|1|AA|C|699
4V6G|1|AA|G|700
4V6G|1|AA|C|701
4V6G|1|AA|A|702
4V6G|1|AA|G|703
4V6G|1|AA|A|704
4V6G|1|AA|U|705
4V6G|1|AA|A|706
4V6G|1|AA|C|707

Current chains

Chain AA

16S RRNA (E.COLI NUMBERING)

Nearby chains

Chain AN

30S RIBOSOMAL PROTEIN S11

Chain BA

Large subunit ribosomal RNA; LSU rRNA