IL_4V6G_046

3D structure

PDB id

4V6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of 70S ribosome with two tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCAGC*GGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6G_046 not in the Motif Atlas

Geometric match to IL_8C3A_116

Geometric discrepancy: 0.3641

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

4V6G|1|AA|C|1128
4V6G|1|AA|C|1129
4V6G|1|AA|A|1130
4V6G|1|AA|G|1131
4V6G|1|AA|C|1132
*
4V6G|1|AA|G|1142
4V6G|1|AA|G|1143
4V6G|1|AA|G|1144

Current chains

Chain AA

16S RRNA (E.COLI NUMBERING)

Nearby chains

Chain AL

30S RIBOSOMAL PROTEIN S9

Chain AM

30S RIBOSOMAL PROTEIN S10