IL_4V6G_149

3D structure

PDB id

4V6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of 70S ribosome with two tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UCC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6G_149 not in the Motif Atlas

Homologous match to IL_7A0S_082

Geometric discrepancy: 0.2608

The information below is about IL_7A0S_082

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

4V6G|1|BA|U|2401
4V6G|1|BA|C|2402
4V6G|1|BA|C|2403
*
4V6G|1|BA|G|2414
4V6G|1|BA|G|2415

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B6

50S ribosomal protein L33

Chain B8

50S ribosomal protein L35

Chain BO

50S ribosomal protein L15

Chain BZ

50S ribosomal protein L28