IL_4V6G_192

3D structure

PDB id

4V6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of 70S ribosome with two tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGGCCAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6G_192 not in the Motif Atlas

Homologous match to IL_4LFB_020

Geometric discrepancy: 0.0767

The information below is about IL_4LFB_020

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

4V6G|1|CA|C|504
4V6G|1|CA|G|505
4V6G|1|CA|G|506
4V6G|1|CA|C|507
4V6G|1|CA|C|508
4V6G|1|CA|A|509
4V6G|1|CA|A|510
4V6G|1|CA|C|511
*
4V6G|1|CA|G|540
4V6G|1|CA|G|541

Current chains

Chain CA

16S RRNA (E.COLI NUMBERING)

Nearby chains

Chain CG

30S RIBOSOMAL PROTEIN S4

Chain CH

30S RIBOSOMAL PROTEIN S5

Chain CO

30S RIBOSOMAL PROTEIN S12