IL_4V6G_313

3D structure

PDB id

4V6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of 70S ribosome with two tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

4V6G|1|DA|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6G_313 not in the Motif Atlas

Homologous match to IL_7A0S_076

Geometric discrepancy: 0.0979

The information below is about IL_7A0S_076

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

4V6G|1|DA|G|2070
4V6G|1|DA|A|2071
*
4V6G|1|DA|U|2438
4V6G|1|DA|A|2439
4V6G|1|DA|C|2440
4V6G|1|DA|C|2441

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CC

Transfer RNA; tRNA

Chain DD

50S ribosomal protein L2