IL_4V6I_010

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

CUGU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_010 not in the Motif Atlas

Homologous match to IL_8CRE_401

Geometric discrepancy: 0.5914

The information below is about IL_8CRE_401

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15043.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

4

Unit IDs

4V6I|1|CA|C|149
4V6I|1|CA|U|150
4V6I|1|CA|G|151
4V6I|1|CA|U|152
*
4V6I|1|CA|A|162
4V6I|1|CA|G|163
4V6I|1|CA|A|164
4V6I|1|CA|G|165

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AU

40S ribosomal protein S24