IL_4V6I_013

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

UAUCAAC*GUUUCAACG

Length

16 nucleotides

Bulged bases

4V6I|1|CA|U|313, 4V6I|1|CA|C|351

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|CA|U|311
4V6I|1|CA|A|312
4V6I|1|CA|U|313
4V6I|1|CA|C|314
4V6I|1|CA|A|315
4V6I|1|CA|A|316
4V6I|1|CA|C|317
*
4V6I|1|CA|G|347
4V6I|1|CA|U|348
4V6I|1|CA|U|349
4V6I|1|CA|U|350
4V6I|1|CA|C|351
4V6I|1|CA|A|352
4V6I|1|CA|A|353
4V6I|1|CA|C|354
4V6I|1|CA|G|355

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AL

40S ribosomal protein rpS23 (S12p)

Chain AP

40S ribosomal protein rpS11 (S17p)

Chain DA

Large subunit ribosomal RNA; LSU rRNA