IL_4V6I_014

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

UUUA*UG

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_014 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.2658

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_59877.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

4V6I|1|CA|U|318
4V6I|1|CA|U|319
4V6I|1|CA|U|320
4V6I|1|CA|A|323
*
4V6I|1|CA|U|345
4V6I|1|CA|G|346

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AP

40S ribosomal protein rpS11 (S17p)

Chain BT

60S ribosomal protein rpL19 (L19e)

Chain DA

Large subunit ribosomal RNA; LSU rRNA