IL_4V6I_025

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GCU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_025 not in the Motif Atlas

Homologous match to IL_4V88_417

Geometric discrepancy: 0.2514

The information below is about IL_4V88_417

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V6I|1|CA|G|624
4V6I|1|CA|C|625
4V6I|1|CA|U|626
*
4V6I|1|CA|A|973
4V6I|1|CA|A|974
4V6I|1|CA|C|975

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AO

40S ribosomal protein rpS13 (S15p)

Chain DA

Large subunit ribosomal RNA; LSU rRNA