IL_4V6I_027

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GAUU*GUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_027 not in the Motif Atlas

Geometric match to IL_4WF9_109

Geometric discrepancy: 0.3507

The information below is about IL_4WF9_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

4V6I|1|CA|G|660
4V6I|1|CA|A|661
4V6I|1|CA|U|662
4V6I|1|CA|U|663
*
4V6I|1|CA|G|669
4V6I|1|CA|U|670
4V6I|1|CA|G|671
4V6I|1|CA|U|672

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AC

40S ribosomal protein rpS9 (S4p)

Chain AD

40S ribosomal protein rpS4 (S4e)