IL_4V6I_028

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_028 not in the Motif Atlas

Geometric match to IL_7RQB_090

Geometric discrepancy: 0.1998

The information below is about IL_7RQB_090

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_27635.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

38

Unit IDs

4V6I|1|CA|G|868
4V6I|1|CA|A|869
*
4V6I|1|CA|U|958
4V6I|1|CA|U|959
4V6I|1|CA|U|960

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AH

40S ribosomal protein rpS22 (S8p)

Chain AO

40S ribosomal protein rpS13 (S15p)

Chain AX

40S ribosomal protein rpS27 (S27e)