IL_4V6I_033

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GGGAUC*GUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_033 not in the Motif Atlas

Homologous match to IL_4V88_435

Geometric discrepancy: 0.297

The information below is about IL_4V88_435

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_22046.1

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

4V6I|1|CA|G|985
4V6I|1|CA|G|986
4V6I|1|CA|G|987
4V6I|1|CA|A|988
4V6I|1|CA|U|989
4V6I|1|CA|C|990
*
4V6I|1|CA|G|1014
4V6I|1|CA|U|1015
4V6I|1|CA|C|1016

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AK

40S ribosomal protein rpS14 (S11p)

Chain BB

60S ribosomal protein rpL2 (L2p)

Chain DA

Large subunit ribosomal RNA; LSU rRNA