IL_4V6I_038

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|CA|G|1111
4V6I|1|CA|G|1112
4V6I|1|CA|A|1113
4V6I|1|CA|G|1114
4V6I|1|CA|U|1115
4V6I|1|CA|A|1116
4V6I|1|CA|U|1117
4V6I|1|CA|G|1118
*
4V6I|1|CA|U|1129
4V6I|1|CA|G|1130
4V6I|1|CA|A|1131
4V6I|1|CA|A|1132
4V6I|1|CA|A|1133
4V6I|1|CA|C|1134

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AL

40S ribosomal protein rpS23 (S12p)

Chain Ac

Unknown 40S ribosomal protein XS2

Chain DA

Large subunit ribosomal RNA; LSU rRNA