IL_4V6I_040

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

ACAC*GUCCU

Length

9 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|CA|A|1157
4V6I|1|CA|C|1158
4V6I|1|CA|A|1160
4V6I|1|CA|C|1161
*
4V6I|1|CA|G|1616
4V6I|1|CA|U|1617
4V6I|1|CA|C|1618
4V6I|1|CA|C|1620
4V6I|1|CA|U|1621

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AF

40S ribosomal protein rpS5 (S7p)

Chain AI

40S ribosomal protein rpS16 (S9p)

Chain AY

40S ribosomal protein rpS28 (S28e)

Chain CB

Transfer RNA; tRNA

Chain CC

MRNA, RNA (5'-R(P*AP*AP*AP*AP*GP*AP*CP*UP*UP*CP*A)-3')