IL_4V6I_042

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

4V6I|1|CA|A|1460

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_042 not in the Motif Atlas

Homologous match to IL_4V88_445

Geometric discrepancy: 0.4011

The information below is about IL_4V88_445

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

4V6I|1|CA|G|1178
4V6I|1|CA|G|1179
*
4V6I|1|CA|C|1459
4V6I|1|CA|A|1460
4V6I|1|CA|C|1461

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AM

40S ribosomal protein rpS18 (S13p)

Chain AR

40S ribosomal protein rpS15 (S19p)

Chain AZ

40S ribosomal protein rpS30 (S30e)

Chain CB

Transfer RNA; tRNA