IL_4V6I_053

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_053 not in the Motif Atlas

Homologous match to IL_4V88_462

Geometric discrepancy: 0.1864

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V6I|1|CA|G|1540
4V6I|1|CA|G|1541
4V6I|1|CA|G|1542
4V6I|1|CA|A|1543
4V6I|1|CA|U|1544
4V6I|1|CA|A|1545
*
4V6I|1|CA|U|1566
4V6I|1|CA|U|1567
4V6I|1|CA|C|1568
4V6I|1|CA|A|1569
4V6I|1|CA|A|1570
4V6I|1|CA|C|1571

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AM

40S ribosomal protein rpS18 (S13p)

Chain AR

40S ribosomal protein rpS15 (S19p)

Chain AS

40S ribosomal protein rpS19 (S19e)