IL_4V6I_054

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

CCGCCC*GUAACAAG

Length

14 nucleotides

Bulged bases

4V6I|1|CA|C|1637, 4V6I|1|CA|A|1766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|CA|C|1636
4V6I|1|CA|C|1637
4V6I|1|CA|G|1638
4V6I|1|CA|C|1639
4V6I|1|CA|C|1640
4V6I|1|CA|C|1641
*
4V6I|1|CA|G|1760
4V6I|1|CA|U|1761
4V6I|1|CA|A|1762
4V6I|1|CA|A|1763
4V6I|1|CA|C|1764
4V6I|1|CA|A|1765
4V6I|1|CA|A|1766
4V6I|1|CA|G|1767

Current chains

Chain CA

18S rRNA

Nearby chains

Chain Ac

Unknown 40S ribosomal protein XS2

Chain CB

Transfer RNA; tRNA

Chain CC

MRNA, RNA (5'-R(P*AP*AP*AP*AP*GP*AP*CP*UP*UP*CP*A)-3')

Chain DA

Large subunit ribosomal RNA; LSU rRNA