IL_4V6I_055

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_055 not in the Motif Atlas

Homologous match to IL_4V88_465

Geometric discrepancy: 0.175

The information below is about IL_4V88_465

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V6I|1|CA|G|1642
4V6I|1|CA|U|1643
4V6I|1|CA|C|1644
*
4V6I|1|CA|G|1757
4V6I|1|CA|U|1758
4V6I|1|CA|C|1759

Current chains

Chain CA

18S rRNA

Nearby chains

Chain Ac

Unknown 40S ribosomal protein XS2

Chain CC

MRNA, RNA (5'-R(P*AP*AP*AP*AP*GP*AP*CP*UP*UP*CP*A)-3')

Chain DA

Large subunit ribosomal RNA; LSU rRNA