IL_4V6I_060

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

CUUA*UUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_060 not in the Motif Atlas

Geometric match to IL_4WF9_109

Geometric discrepancy: 0.3533

The information below is about IL_4WF9_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

4V6I|1|CA|C|1664
4V6I|1|CA|U|1665
4V6I|1|CA|U|1666
4V6I|1|CA|A|1667
*
4V6I|1|CA|U|1734
4V6I|1|CA|U|1735
4V6I|1|CA|G|1736
4V6I|1|CA|G|1737

Current chains

Chain CA

18S rRNA

Nearby chains

Chain BM

60S ribosomal protein rpL23 (L14p)

Chain DA

Large subunit ribosomal RNA; LSU rRNA