IL_4V6I_070

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_070 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.3063

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

4V6I|1|DA|C|28
4V6I|1|DA|G|30
*
4V6I|1|DA|C|54
4V6I|1|DA|G|55
4V6I|1|DA|G|56

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BP

60S ribosomal protein rpL15 (L15e)

Chain Bl

60S ribosomal protein rpL37 (L37e)