IL_4V6I_071
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- UGAACUU*AUCAAUAA
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6I_071 not in the Motif Atlas
- Geometric match to IL_4V9F_006
- Geometric discrepancy: 0.1225
- The information below is about IL_4V9F_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.1
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 18
Unit IDs
4V6I|1|DA|U|32
4V6I|1|DA|G|33
4V6I|1|DA|A|34
4V6I|1|DA|A|35
4V6I|1|DA|C|36
4V6I|1|DA|U|37
4V6I|1|DA|U|38
*
4V6I|1|DA|A|45
4V6I|1|DA|U|46
4V6I|1|DA|C|47
4V6I|1|DA|A|48
4V6I|1|DA|A|49
4V6I|1|DA|U|50
4V6I|1|DA|A|51
4V6I|1|DA|A|52
Current chains
- Chain DA
- 25S rRNA
Nearby chains
- Chain BL
- 60S ribosomal protein rpL13 (L13e)
- Chain BO
- 60S ribosomal protein rpL28 (L15p)
- Chain BP
- 60S ribosomal protein rpL15 (L15e)
- Chain Bl
- 60S ribosomal protein rpL37 (L37e)
- Chain Br
- 60S ribosomal protein rpL42 (L44e)
Coloring options: