IL_4V6I_073

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

CUG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_073 not in the Motif Atlas

Homologous match to IL_8C3A_008

Geometric discrepancy: 0.3139

The information below is about IL_8C3A_008

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V6I|1|DA|C|125
4V6I|1|DA|U|126
4V6I|1|DA|G|127
*
4V6I|1|DA|C|141
4V6I|1|DA|C|142
4V6I|1|DA|G|143

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BH

60S ribosomal protein rpL8 (L7ae)

Chain BP

60S ribosomal protein rpL15 (L15e)

Chain Bc

60S ribosomal protein rpL35 (L29p)

Chain Bq

60S ribosomal protein rpL41 (L41e)

Chain DB

5.8S ribosomal RNA; 5.8S rRNA