IL_4V6I_075

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GGCA*UGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_075 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.3343

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

4V6I|1|DA|G|161
4V6I|1|DA|G|162
4V6I|1|DA|C|163
4V6I|1|DA|A|164
*
4V6I|1|DA|U|257
4V6I|1|DA|G|258
4V6I|1|DA|C|259

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BL

60S ribosomal protein rpL13 (L13e)