3D structure

PDB id
4V6I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
8.8 Å

Loop

Sequence
CU*GUG
Length
5 nucleotides
Bulged bases
4V6I|1|DA|U|230
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V6I|1|DA|C|185
4V6I|1|DA|U|186
*
4V6I|1|DA|G|229
4V6I|1|DA|U|230
4V6I|1|DA|G|231

Current chains

Chain DA
25S rRNA

Nearby chains

Chain BD
60S ribosomal protein rpL4 (L4p)
Chain BY
60S ribosomal protein rpL26 (L24p)
Chain DB
5.8S ribosomal RNA; 5.8S rRNA

Coloring options:

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