IL_4V6I_080
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- UUGGC*GCA
- Length
- 8 nucleotides
- Bulged bases
- 4V6I|1|DA|U|329
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6I_080 not in the Motif Atlas
- Geometric match to IL_4V9F_003
- Geometric discrepancy: 0.3175
- The information below is about IL_4V9F_003
- Detailed Annotation
- Major groove platform with extra cWW
- Broad Annotation
- Major groove platform
- Motif group
- IL_36931.2
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 24
Unit IDs
4V6I|1|DA|U|328
4V6I|1|DA|U|329
4V6I|1|DA|G|330
4V6I|1|DA|G|331
4V6I|1|DA|C|332
*
4V6I|1|DB|G|31
4V6I|1|DB|C|32
4V6I|1|DB|A|33
Current chains
- Chain DA
- 25S rRNA
- Chain DB
- 5.8S rRNA
Nearby chains
- Chain BD
- 60S ribosomal protein rpL4 (L4p)
- Chain BL
- 60S ribosomal protein rpL13 (L13e)
- Chain BP
- 60S ribosomal protein rpL15 (L15e)
- Chain BY
- 60S ribosomal protein rpL26 (L24p)
- Chain Bl
- 60S ribosomal protein rpL37 (L37e)
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