IL_4V6I_082
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGUAC
- Length
- 18 nucleotides
- Bulged bases
- 4V6I|1|DA|A|398, 4V6I|1|DA|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6I_082 not in the Motif Atlas
- Homologous match to IL_5TBW_014
- Geometric discrepancy: 0.2388
- The information below is about IL_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
4V6I|1|DA|G|376
4V6I|1|DA|A|377
4V6I|1|DA|A|378
4V6I|1|DA|C|379
*
4V6I|1|DA|G|390
4V6I|1|DA|A|391
4V6I|1|DA|G|392
4V6I|1|DA|U|393
4V6I|1|DA|G|394
4V6I|1|DA|A|395
4V6I|1|DA|A|396
4V6I|1|DA|A|397
4V6I|1|DA|A|398
4V6I|1|DA|A|399
4V6I|1|DA|G|400
4V6I|1|DA|U|401
4V6I|1|DA|A|402
4V6I|1|DA|C|403
Current chains
- Chain DA
- 25S rRNA
Nearby chains
- Chain BV
- 60S ribosomal protein rpL17 (L22p)
- Chain BY
- 60S ribosomal protein rpL26 (L24p)
- Chain Bo
- 60S ribosomal protein rpL39 (L39e)
- Chain DB
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: