IL_4V6I_083
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- GUGAAAU*ACGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6I_083 not in the Motif Atlas
- Homologous match to IL_5TBW_015
- Geometric discrepancy: 0.1356
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V6I|1|DA|G|404
4V6I|1|DA|U|405
4V6I|1|DA|G|406
4V6I|1|DA|A|407
4V6I|1|DA|A|408
4V6I|1|DA|A|409
4V6I|1|DA|U|410
*
4V6I|1|DB|A|13
4V6I|1|DB|C|14
4V6I|1|DB|G|15
4V6I|1|DB|G|16
4V6I|1|DB|A|17
4V6I|1|DB|U|18
4V6I|1|DB|C|19
Current chains
- Chain DA
- 25S rRNA
- Chain DB
- 5.8S rRNA
Nearby chains
- Chain BD
- 60S ribosomal protein rpL4 (L4p)
- Chain BV
- 60S ribosomal protein rpL17 (L22p)
- Chain Bh
- 60S ribosomal protein pL32 (L32e)
Coloring options: